Scaffold Ga0079957_1019710

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1019710
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4749
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000141	Metagenome / Metatranscriptome	1941	Y
F002135	Metagenome / Metatranscriptome	590	Y
F004279	Metagenome / Metatranscriptome	445	Y
F046377	Metagenome / Metatranscriptome	151	Y
F100682	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_101971010	F004279	GGAGG	MGYVEIINGSGFTLRMENDKRTLTPSTDRCVSCNDDRLLQDGIYLVCTQCHCRQ*
Ga0079957_101971011	F000141	AGTAGG	MDHAQFKCNGCKRNTEFLWLERVQTPEGFKAYQCMDCGCVGVKNIAEALTINDSDIGRCDKCGSWKFNTVVCHTCVLLKEQ*
Ga0079957_101971013	F100682	AGGA	MPIATAEDWARQNKMRQEWLAANPDAEYEGWMSI*
Ga0079957_10197104	F002135	N/A	MPSTRRRKKVNRRKVRKSPEPLSKLEVFYIAKHEMFKAARKAGFSESVALYLMDSPESMPDWIVGDKGIIPTIPTPDEDED*
Ga0079957_10197106	F046377	N/A	MKIQIDLKAADFEHLWIQSMEWQNNDWQSQAGRFEPTPIFSWQYAYWFDDYAALKMAEGFINGLGKNYAIHSDENTGDWVMLTNYASPCHLRKTLVNA*