Scaffold Ga0079957_1019568

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1019568
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4771
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005727	Metagenome / Metatranscriptome	392	Y
F034907	Metagenome / Metatranscriptome	173	Y
F058099	Metagenome / Metatranscriptome	135	Y
F081278	Metagenome / Metatranscriptome	114	Y
F095381	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_101956810	F058099	N/A	MTKQLLISQLRLGKNGNDILHILDALCSGMDSGESRQDNVPTLDEIQF*
Ga0079957_101956813	F034907	GAGG	MITAIVGGVILATFGIMFYLDDRMGGGLYDPDPTAFDRYRRNRK*
Ga0079957_10195683	F081278	N/A	VIRRHATADDFTRWESAAAAMTDAELIYAAADCRKVESLWRGVDGMVEGFYSDQAATYGTELYRRRASR*
Ga0079957_10195685	F005727	N/A	MLHTLTRSRSASYHRATMLKLLIGGTLLWLLWEPIHPVRHVTAEALSTAAEMIRR*
Ga0079957_10195688	F095381	N/A	MTTIQVVINGNQVQGQIDEIAKILGMVSNTMTPPVSSTLEEELLPFNKFAIRELTMHLGEELATQVVNKLEKCAKSYFPDFRNFVGMYQKVAGNIEHRQLLKTISAVYRFKFGRYMNESAKYALKSEIKYATICPHCGAVANAFVLRLQKEGLW*