NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1016159

Scaffold Ga0079957_1016159


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1016159 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5379
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.76%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001840Metagenome / Metatranscriptome627Y
F009682Metagenome / Metatranscriptome314Y
F024782Metagenome / Metatranscriptome204Y
F102699Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_10161592F102699GGAMHEPSFYLSLNLPKNFTREDAEKIRKDVLDFLEGKRHYGAKYDGKNGITVKVISVSTNHD
Ga0079957_10161593F024782N/AMIEKAIERLRAYNRWRTGEDDRTMDEADIQPSQVTADIKNVCDELEKLISIYASRN*
Ga0079957_10161596F009682N/AMKKDLYMKKPNENIVIQSDDLKYDGKNIIIPSYYAGIISEYLANVDLKAASFNDADKHDFMAFCSFFEAILDYKDKGN*
Ga0079957_10161598F001840N/AMKEEQDSTFLICDCFSHGLLVEKFKDEQEVCISLFERGLNGRILSWSSRLKWCWQILRYGKPWSDFVILNIENQKRLKEFL*

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