Scaffold Ga0079957_1014735

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1014735
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5697
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021515	Metagenome / Metatranscriptome	218	Y
F039598	Metagenome / Metatranscriptome	163	Y
F040488	Metagenome / Metatranscriptome	161	Y
F097188	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10147353	F097188	AGG	MQTLEDAGYEVIKHPIKKVRVQFHGGLWYVEYQRPAQYYIDGWWWFDDSKHPEYKDAFVRAQELAAEGGTKEVRHKTLVFEVES*
Ga0079957_10147355	F021515	GGA	MIDFESRLSKIETDVAAMKEKVSFFTVIYEKFDRTLDKLDERTIEDKKELQTMMDDLRTDLLQEMKSLREEMAAQHAVEKQKIEDLNKWRWLVMGGAVVIGWILSKLGLPFEIK*
Ga0079957_10147356	F040488	GGAGG	MRYILALSLLFLAGCANPLTRLVPKIEMPAPPADLMKAPKPLKTIIPPTTPQAELTRDVSPAGK*
Ga0079957_10147359	F039598	AGGAG	MGTLVVLVLLAVAGWIVWKLVKKPDLNNDGKVDAQDVLVAAKEVAAEAKAGAGKAAEKVKKARKKKAE*