Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1009315 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1009315 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7534
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (86.36%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7534

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (86.36%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048854	Metagenome	147	Y
F053996	Metagenome	140	Y
F057212	Metagenome	136	Y
F074591	Metagenome / Metatranscriptome	119	Y
F086842	Metagenome	110	Y
F095177	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10093151	F057212	GGA	MTTIITTTGNNFATLTADQGITSNLIHPDMHKIVQQDTWLIGVAGSARVCDQLQYSIEYPKPPIDVIKSGNWMKWLVTKVMPLIENKVKDDDIEAEAILVTHGKAFLISENLSVLTASPYWAIGSGAELAIGSLVDKQYLIGWNKNHDLSALRAMEAASMHDPNTRGSVDQYRSYTNGKVMTKANGI*
Ga0079957_100931513	F095177	AGGTGG	MGFVPFSMERASRDDKHKIRKMLEYMGITHPAQQMEFMSALLDKPFDSSKMSKQDFITLRSKLMNIQETKDKA*
Ga0079957_100931514	F074591	AGGA	MKSNWNWTPRARLIGELLTAIGVVATGCVLFVGTWFALGGN*
Ga0079957_100931518	F086842	AGGA	MNKADVGKVLAVAMAIDARLGAADESAFRAKVEGWSLALSETMDFEFARDAVGKHYKSATETLMPAHLNAMWTAHRSRQHEIDNVRAIGSSTKSQGMPDDVRAKLVELGLKRP*
Ga0079957_100931520	F053996	AGGAG	MRTPSEQLVQTTWMADHKLFQNHDAVTPVDWAKVWEIIDNIDQPEFDEHQLVMVAVLEFLCGSEMVEVSLDEIANLPELERQAVVDALRLKWSKVELQENL*
Ga0079957_100931521	F048854	AGG	MADEQKENKENLIALRLNNEQMLAVRQWAHQHNANVSQVIRSAIELMTGAKQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1009315

Overview

Ecosystem & Geography

Associated Families

Sequences