Basic Information | |
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Taxon OID | 3300005805 Open in IMG/M |
Scaffold ID | Ga0079957_1009224 Open in IMG/M |
Source Dataset Name | Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7569 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (62.50%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Wichita, Kansas, USA | |||||||
Coordinates | Lat. (o) | 37.7330997 | Long. (o) | -97.7990663 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003378 | Metagenome / Metatranscriptome | 490 | Y |
F005528 | Metagenome | 397 | Y |
F006986 | Metagenome | 360 | Y |
F020354 | Metagenome | 224 | Y |
F021759 | Metagenome | 217 | N |
F041650 | Metagenome | 159 | N |
Protein ID | Family | RBS | Sequence |
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Ga0079957_100922410 | F006986 | N/A | VTVVLVTWHDAHSGAESWINIKDLDTDPAEVESVGFLLATGDGGKPDHVTLYQSRNEDSVDHVLHIPVGMVKNIKVLMDLEIKI* |
Ga0079957_100922411 | F005528 | AGGA | MRILTAILATLTSLTVSLGIAQAVSAPTHSSVAVIALQPLWQADRLDPIQPIRYRHGDTSWLPSLAKQAGWPDHAIPKLTQIVLRESGGCPNRRGGDMVDKDCNITGVSEWNHRSDTGLLQINGVNYDPSRNKWAAVCRELNICTQDPLLDPLTNLKAGLVLYNLSGFEPWNPCNWKKCK |
Ga0079957_10092243 | F041650 | N/A | MREDIQLSLAEVQMPRTRYQLEHFVIGAHDTPEMQFVQVCRELEALHYTIKEVAMQVRKTEYEIEDLREKGDRISQVEADIKELGLERTRLVAIGAVREYDTLVEIYDQIPHFTREQIDASQPDYWQARLGRQANLQIMSGGANWAHLEALDQVGVLQPMIQAQQDRAKELHQ* |
Ga0079957_10092246 | F020354 | AGAAG | MFKKLKDELFALGFTLGASAITIMTLSGSLQNWALFFTFLSLALHLAGVLTKDGEDHGARSED* |
Ga0079957_10092247 | F003378 | GGAG | MVPEVKIKQNPTIAKFLDLGQRLVSLFLANALPAITTGAVIGISVGKAAIMAGAMAVIKVVSALAEASVDGELDSEEIKQAFSGAKKK* |
Ga0079957_10092249 | F021759 | AGAAGG | MDTGLATVLAAAVATFGGIIVALMQLKGFREENRADHAVVQKRLDNLIDMVGKQGARLTSHLDWHVTKEPSGSLTKTKQVATRKKK* |
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