Scaffold Ga0079957_1008042

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1008042
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8184
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001279	Metagenome	732	Y
F013413	Metagenome	271	N
F024785	Metagenome	204	Y
F032279	Metagenome	180	Y
F051116	Metagenome	144	Y
F093869	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10080421	F013413	AGG	MTENEFDETFDMRLEKENQQTLARMREFQMIGEQISKMPVTSTRTLEIEVRYLMGIISELEAQVKNLESETRRLEQLVHRV
Ga0079957_100804210	F001279	AGG	MPVSTTIQVVGVKDTINALRKIDPQLQKDFKAQATQIAEPAINAGRAVYTQVPLSGMAYNWTSNGRKVFPFTVSKAIKGVRMRFDTRRNAVGVILIEQKDPAAAIFETAGRANANKLSANLEPVTAGRTRLIGPAVYKARRKIEREMQAMILDTIRKVQKDI*
Ga0079957_100804215	F051116	N/A	CASAANQFCYRRRQEVGYFDALATSPSGDVTLATIMYGAALYRQRGGISDFASFDGMSAGSTNGLSPIVKQLLGVDRPQVA*
Ga0079957_10080422	F032279	GAGG	MPFIIKTIIAFALSAIGLGVYHVPQPRPDMASTAPTSAPYEAVGGFGQYIADTYRYVPPVTTTLAPDPVYKHGDCSWLPKLALQAGWSVHDLKQLRQIALRESGCCPNRAGGDIVDKDCNIIGVAEWSHRSDSGLMQINGVHWLPTHKQYDGLICKQMQICTQQPLFDALTNLQAARLLFDKAGWQPWSICHRDKTCK*
Ga0079957_10080423	F024785	GAG	VKPYTVNAAPVVKRPLAGLDVWITRCIKHSDKSLWNNGSWIIRDIKSKPGTISNHAKGVAVDLSYRWQSEKNKGRQDGRKVSLAYIIKLLENADTLGVQLVIDYALNRSWKCDRGTWIGGKFESGDWWHIEVDPVMCNSPELAKQAWDKVFGVIPTVVKKPV*
Ga0079957_10080424	F093869	AGG	MSLQTGAKLENEALHARLVFIVGVIMAVTFAIMVIGLLFGMLFVNMPAELSPLDGSIVDLLSTISVFLTGALSGLVASNGIKKNAKVEAE*