NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1007046

Scaffold Ga0079957_1007046


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1007046 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8904
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006300Metagenome376Y
F011293Metagenome292Y
F013882Metagenome267Y
F020893Metagenome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_100704614F011293GGAMRVVLCILSEEQMSSNIDPGDAAYRAWQLTNGDRMEQYGHPFDDYTRVRRIFGSITNYHHNLSTQEAIMFMVCVKLARLMKSLEEGKMHEDSLVDAIGYLNCLHMADAKEQLHDAPKHVIGDMAIEY*
Ga0079957_10070462F013882GAGMLRTWLPYYLWRESQKTVAVDTSVTIAGVKETLRELQKLEPELAKDIKRDFKQIVDPIVKDARSKVLAQPLSGFARNWKAGALMPWNQSSVSKSIIARFSNRKRGNALAVFSVTMKSPAGTIFDMAGRKSANRLAQTLSALYGAPSRLMWPAYDRNANEVNENLERVVEKITDATTRRLTR*
Ga0079957_10070467F006300AGGAMSDKYFAMLEDWAKSFVAGSVAVLITSDYDLTNALKAGLAAMLPMIYAWANTKDERYGRK
Ga0079957_10070469F020893GGAMPTEVTVALISAVAIVSAAVLPAVLIQSLRKENSEDHQYVRRVLTRVERKLDNHLEDHDNGVTRRNKTKH*

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