Basic Information | |
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Taxon OID | 3300005805 Open in IMG/M |
Scaffold ID | Ga0079957_1007046 Open in IMG/M |
Source Dataset Name | Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8904 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (81.25%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Wichita, Kansas, USA | |||||||
Coordinates | Lat. (o) | 37.7330997 | Long. (o) | -97.7990663 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006300 | Metagenome | 376 | Y |
F011293 | Metagenome | 292 | Y |
F013882 | Metagenome | 267 | Y |
F020893 | Metagenome | 221 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0079957_100704614 | F011293 | GGA | MRVVLCILSEEQMSSNIDPGDAAYRAWQLTNGDRMEQYGHPFDDYTRVRRIFGSITNYHHNLSTQEAIMFMVCVKLARLMKSLEEGKMHEDSLVDAIGYLNCLHMADAKEQLHDAPKHVIGDMAIEY* |
Ga0079957_10070462 | F013882 | GAG | MLRTWLPYYLWRESQKTVAVDTSVTIAGVKETLRELQKLEPELAKDIKRDFKQIVDPIVKDARSKVLAQPLSGFARNWKAGALMPWNQSSVSKSIIARFSNRKRGNALAVFSVTMKSPAGTIFDMAGRKSANRLAQTLSALYGAPSRLMWPAYDRNANEVNENLERVVEKITDATTRRLTR* |
Ga0079957_10070467 | F006300 | AGGA | MSDKYFAMLEDWAKSFVAGSVAVLITSDYDLTNALKAGLAAMLPMIYAWANTKDERYGRK |
Ga0079957_10070469 | F020893 | GGA | MPTEVTVALISAVAIVSAAVLPAVLIQSLRKENSEDHQYVRRVLTRVERKLDNHLEDHDNGVTRRNKTKH* |
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