Scaffold Ga0079957_1006798

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1006798
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9080
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (89.66%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040628	Metagenome	161	Y
F041160	Metagenome	160	Y
F073469	Metagenome	120	Y
F105049	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100679815	F040628	AGGAGG	MRHFIFLIGSTDDFESLEDLKNTYFNGNDTYRNMSVFPVSLSEVCQVAGYDTLEEIATLIGRGEAMAEGWCLDDTLSTLLEA*
Ga0079957_100679821	F073469	AGGAGG	MARSLKDVNSKHRVKRTLETIRLLRGFDRAAHFAAGGTPADWRGRSDVRPDKRKDSNRRACRGPVRDD*
Ga0079957_10067987	F105049	AGGAGG	MAKAFPIEYYRSTYRAHMTRAGLFGVPSAEFNDRVRARLAGGYKPTPQQWSSAAYLTVQSIAGRKCCPKAVGRACMCEDSFTCPDHGVTCFGSHD*
Ga0079957_10067989	F041160	AGGAGG	MASKNVKVIEVSQVDGKLTVVGTVGETPFTASPFQWGSKMLMKVEAEGLDRGSRIAIGHAAKKALKVAELALPEAVLKRPRKAKVEAEPVQAEVGVEELPVGFATLDEALASLE*