Scaffold Ga0079957_1006614

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1006614
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9236
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (86.36%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F010016	Metagenome	309	Y
F014840	Metagenome	259	Y
F033405	Metagenome	177	Y
F046899	Metagenome	150	Y
F100665	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100661410	F100665	AGGAG	MNKRKPYMKVVSIKDRKDGDCDLKLDINQAGKELLMQAGVQKALSDYMVANTGKLSFWDKLKICWNILK*
Ga0079957_100661411	F014840	GAGG	LVEGSKMIPFSYAVIDDDGEVIRKHRWSVKEAKWFTEKNPDVRVVKLDKPIEAKEDLFKLVGECLF*
Ga0079957_100661412	F033405	GGAG	MISKKTDEQLIEAVNQYMEKYPNATRNHIVLHATGSATRVRELAKQGLIKLPKALPKGANTNWNGYFKNVSETNPSRKGMKYSV*
Ga0079957_100661414	F046899	N/A	VQNAKLNNFSPEARIAIKEFEAWQMRVFAKNAKKGWRFFNPDSFDKPTPRSAKEAWGGPYKRDDFEKNEDRNSKIMFAIVVVLLILLSIL*
Ga0079957_100661417	F010016	AGG	MKKTAQNDVTGDWLHSKPNSEQFEKNFDLIFRKKKPEVLAEYELNKSTGDVQKVDKE*
Ga0079957_10066148	F006587	GGAGG	MVDSNKYEGTGFVLVGLIVGCCITWGVMKYSQTQTKYKMNLKCIQGELYEEVKTNMFVKSHLECFEQRSF*