Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1006497 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1006497 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9335
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (83.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

9335

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (83.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004475	Metagenome / Metatranscriptome	436	Y
F011077	Metagenome / Metatranscriptome	295	Y
F034566	Metagenome	174	Y
F034573	Metagenome	174	Y
F054581	Metagenome	139	Y
F068817	Metagenome	124	Y
F084233	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100649710	F034566	AGG	MSFKLKSIIWAQSILIVILATALLFMGGDLKQSRKMTLDQSNYCIRYTSDIIASSRLDLIREQDAHGRDIDKANTVISDIIDRYNAIVARYNKSVRGSDYNPLNPYSYKIMRTVP*
Ga0079957_100649711	F054581	AGGA	MCPYCGNKLIPILYGYANPKYVDMHKQGLVFLVSTTYHTKNSPSSYCRKCEESFDIKIKYEV*
Ga0079957_100649712	F011077	AGGA	MDNNLTWDEGLVWKGWTYSPTANRYYFDDIGNESLAAFWSDEFLNQAYKE*
Ga0079957_100649714	F068817	AGG	MSDLDEFMKDPWKKVNEWRKTPHACDYIYSIDPSGTMFFEICKYCFDTNGVVDMNNRED*
Ga0079957_100649716	F034573	AGGAG	VYRINRVRRETKEEKVATAIGKLLSDFYLDLEKVGYYLARATPYLIYRRAMEVLESAKFQEDTVEQNKLEYRGDR*
Ga0079957_100649723	F084233	N/A	MTLNVEIYEMDYSCSPGGVNCWEVLVDEWCVSDFKTAGDALNYVLDKYPNEELNLNVKSLNWYFKEYELEYSL*
Ga0079957_10064975	F004475	GAGG	MSNWTEQVTDEQKEQIWHFIVETVKEIREQIAQDIEGTSDLWKAKGLNKSRRTTKAFQISAAIARGQNEI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1006497

Overview

Ecosystem & Geography

Associated Families

Sequences