Basic Information | |
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Taxon OID | 3300005805 Open in IMG/M |
Scaffold ID | Ga0079957_1004709 Open in IMG/M |
Source Dataset Name | Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11279 |
Total Scaffold Genes | 28 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (46.43%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Wichita, Kansas, USA | |||||||
Coordinates | Lat. (o) | 37.7330997 | Long. (o) | -97.7990663 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F010525 | Metagenome / Metatranscriptome | 302 | Y |
F010681 | Metagenome / Metatranscriptome | 300 | Y |
F048809 | Metagenome / Metatranscriptome | 147 | Y |
F057119 | Metagenome / Metatranscriptome | 136 | Y |
F085647 | Metagenome / Metatranscriptome | 111 | Y |
F090331 | Metagenome / Metatranscriptome | 108 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0079957_100470911 | F057119 | GAG | MTFLLGIGLGSLLTIGTAFIFAADKNILDEGDENYYN* |
Ga0079957_100470913 | F090331 | N/A | MSIGIGIAIYTALVAFVSSIMVYYFKVMYPREEAQLKEKSK* |
Ga0079957_10047092 | F085647 | N/A | MLWQDRNGNWFSTVSPIDAKIERAMIEANANKVWEEKERSGDWLFDEMFGG* |
Ga0079957_100470922 | F010525 | N/A | MYTLYMLKGLAPFVAGLCFENFMTKQGDLCNVRQPPSHVVKYTPGSPENACYRDGIFYPRCKDLENPQVLHYHNLLLKERQ* |
Ga0079957_100470925 | F048809 | GGAG | MIKKFIRWFISPSKKPIVETDDVYSKLIELEERLIALEQENIETSNCLYELMNSIDAVDARIDILTLENWKEKDV* |
Ga0079957_100470926 | F010681 | AGAAG | MKLRMTPKQQMWANIFSCAQRRSDIYFKEKDLERQAREHTTVVLSLQKGDQFWKELL* |
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