Scaffold Ga0079957_1004594

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1004594
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11427
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (88.46%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006622	Metagenome	368	Y
F017452	Metagenome	240	Y
F017968	Metagenome	237	Y
F029755	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100459412	F017452	AGG	MKTDEDDEFDRIAHEAEMKSGQQYHWDVYVSPSQRNQVLDEVAKEIQKMTAFGQDTLDSFSVYIKGMKS*
Ga0079957_100459418	F006622	AGG	VNEYQKQFDLFLKVFVRLCVAWWVLGLLQYLPDELAGKIVDKLLGMIGL*
Ga0079957_10045943	F017968	AGGAG	MHKQQPFLTGSEKANNLANSSSQERLNLQETMKNSEAREWMARYRKKALEEGRGEAQYWWQQTLLDIAKKRGQAAADDLKKRMNEQKDKK*
Ga0079957_10045948	F029755	AGGA	MIDYKLQYHFDEFVTYDDGTTLEKVKVGYDYYPAEFNLPHDHNSAEIYDVFVFSEKGDDISCDLSSSEFERIVSEAKVHHARMLKEQNEI*