Scaffold Ga0079957_1003698

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1003698
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12946
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (65.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024533	Metagenome	205	Y
F025021	Metagenome / Metatranscriptome	203	Y
F042734	Metagenome / Metatranscriptome	157	Y
F057945	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100369818	F057945	GGA	MREFKWERFGDKYYYHDVVTGKIVGAVNKIALQEIWISVVYTGEYSFTINDEKHLGQYITVDYAKEATQRFWDIQNRTLLEQ*
Ga0079957_10036983	F025021	GGAG	MSEMQLSGPLFKVTMTEYERGYGQREMGVKFFTTEFEAKEFCFNYNNPPGDPDCFYRASYQKVN*
Ga0079957_100369837	F042734	N/A	MKDLLKFLPQILSVLPELSKYIKIIPILLVLAGLGYGAFYYFTNYKDPYKCVNNQVFEQIRVDSDVYVFKGDTCIDGKRNYNETE*
Ga0079957_100369839	F024533	N/A	MSGLFFMPIEKTCPQCGTKHQKRGPYCSRSCGNVRVHTEEDKKVRRKKLIEYHQTPEGIATQEKSRRMVIAMNRGEDWREITVDDFAVDIPDVTDYNEFYDSSWGRAEKW*