Scaffold Ga0079957_1003619

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1003619
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13088
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (85.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012658	Metagenome / Metatranscriptome	278	Y
F054798	Metagenome / Metatranscriptome	139	N
F074795	Metagenome	119	Y
F088817	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100361911	F012658	GGAG	MNSLDKIFSAMRSGKYGSVIDTKGNAHVGIINSVIREDGSGKNWIVTVTNRTASERVFIHAK*
Ga0079957_100361924	F088817	AGGAG	MNGYELIAEFERVVCDIIVVPNHWLPEDFRDNRTDGVTLADLDRKCDAREIGETDHQIEKREKDRRIEIYASMIANGQEIEYIPKS*
Ga0079957_100361932	F074795	N/A	MTKEEASIKILQVLKSPMAVMCLPRREEALTLAEEYGITAKDLILEWTKIAERI*
Ga0079957_100361936	F054798	GGAG	MIYINLNEIERLCEIVSYLTKMKMGVVAELKGTRWHIEVTN*