Scaffold Ga0079957_1002945

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1002945
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14696
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (39.39%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F003748	Metagenome / Metatranscriptome	470	Y
F005388	Metagenome / Metatranscriptome	402	N
F012771	Metagenome / Metatranscriptome	277	Y
F028148	Metagenome	192	Y
F045703	Metagenome	152	N
F048938	Metagenome / Metatranscriptome	147	Y
F074789	Metagenome	119	Y
F086618	Metagenome	110	N
F102590	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100294510	F074789	N/A	MQSTIETFRALESDGQVRLRALPETDSYFDVYGEPDSPEERQEIIDQIDRHGCWCVVSEFYADGAWHHADSVGMCAGYENPLNPAENCYVEDLMRAAIDALEMQSTEGALI*
Ga0079957_100294511	F028148	N/A	MKTIHQIIREIQFFDPAIRAFDAHDLPQAVRAYLHHHYRMDARLTDEEQQLIEVSFEPFADNLREAFQDDPRPDATRFYLFDDLSLYVKTNAGPELWADAQVFVVERILPRMRLSRLEADLMREIGMDEQVSEVRDDFFSAFAHILHRDCGIPHCDAREHWNAFSRQLSDSACESIVLGGSESGRAEGIRFASEYTVNA*
Ga0079957_100294513	F102590	GGAG	MKTQFTPGPWRTTGLNVRAGDTLICYAMNHHANAETPEHEKMANARLISLAPQMLLALQRLTHPMADDEDLDYAREVIAKAKGLQ*
Ga0079957_100294517	F002227	N/A	MKLTISSKTNAQTIIDLFNAVINGEVQEHGAQPLSIYDDDKHICSIVAANGEQILELIIEREEGDRIVQQGEPETL*
Ga0079957_100294518	F001964	GGAG	MSRNLFAPPKFKVQISGAIGWSDLKQRVVSFKTVEFRTRKEAEQAARDLNPGEYTQGRLRVVPVEMPEDYDVYPVAERTKANP*
Ga0079957_10029452	F005388	N/A	MSCPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGNPGDNGGACDVTYNDVPVGYNAVTWGPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNMFAKYAIKAVADSSFTQVETIPSGVNELPWIQTGSVGQSLNQATSELTQEMLDVAAATLIRNGATNPDSSGFISFSSDGPVFPLYIGMEASQRIAQNNAALREDLRFADMGSGPGAELLKRIGANRVIKNFRHIPNLFPPRFSYAGGKYTLIQPFTSSSGTKGTVFSVNPSWTTALYEGAFIPTPYVIKSHIVRPVNRVGDLSWQPTNYMGEWQWVTGAYKLDVDCADPLEKKGQHYAEFVHAVEPVFTNQGMTIIFRRCTGALTTIICS*
Ga0079957_100294526	F003748	N/A	MFQVNRKDAGGRYIDAEGEYTVAVTKVEENLDPKGREVCKVTFTTSDGASITDRFLNQENTWFRVNQLVAATNHNVPDGTQVDFLGVKGSYANFLKSMIGLELVITTRFEEYEYNGEKKKTLRLKGMKAVAPIAAETEEKPF*
Ga0079957_100294528	F012771	GAG	MNTPKPKRPTPKIFVVSDDTHKRLKDYATKNGYKLQFVADEAVSEYLKRKEQQ*
Ga0079957_100294529	F048938	AGGAG	MNIEQTKEAIRVMQAFVDGKDLEVLGPVGKWEPLYFPRWGWDDTKYRIKPTYVLRPWTADEVPLGAWMRDFSKQDYRWLIQTSGNDDTRKDWFVNYEHSIDNGKTWLPCGVMEEGK*
Ga0079957_100294531	F045703	AGGAGG	MNIPPALPVAFIYKHAMTSEVLVVDIDRARELDAARPYWQHVSTINPIVILQLIVNAKGRARTKIIKELSEKP*
Ga0079957_10029454	F000922	AGG	MKAEQWTKAKSLYLAGKTWKAIASDLGLNQSTLLSKASREGLPKVRKEMRNMVSSKETVSLESLSALVRSKLAADAASTLERIETYALEGIKDESTREQILGSVAKRSALVFGWSEQGEQASVSINLLGQMPDRQSVEVNVNESDSK*
Ga0079957_10029459	F086618	N/A	MASIQRIETAVSNLINGNLTQARKSARGLTYSDIFDWLTGSVGWPENRSRACADYLIGRIDFRTYCSSANR*