NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1002892

Scaffold Ga0079957_1002892


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1002892 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14839
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (72.73%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002052Metagenome / Metatranscriptome599Y
F009397Metagenome / Metatranscriptome318Y
F010749Metagenome / Metatranscriptome299Y
F011368Metagenome291Y
F020159Metagenome / Metatranscriptome225Y
F047018Metagenome / Metatranscriptome150Y
F057139Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_100289214F011368N/AMNHPLQHRDIAGSHLSPGDHCLVTEHNRLILARVVEVYDTSNQVKLQPLRSDAGGRRSAPNQRTIRRECYNVYRIADQEITMSILRGAV*
Ga0079957_100289221F047018AGGAGMLKLIGFVAVVYIGWITGIIQTILLVTAGLLTTVAGA*
Ga0079957_100289232F002052AGGAGMPRTYKFQFEVICASEGTADETLVESMIDLAMQDLVYDDEFIVALGEKESVTIRVSKLAK
Ga0079957_100289233F057139GAGMNIVKLNRNYNGYHYFSHRVEFYGGPQVRIKQWIRVRNWLWTQFGPSAEQALARADNFDGIQPVWAWDSEKSAVYLKEEALVLFQLRKEFWEDAKNL*
Ga0079957_100289236F010749GGAGGMKKFTFWRNAIVAETYIVEAKDEEEAREMLRDGQVEVFSEEWMDWATDDFELEFTEEIDPLYRMVKDYKSVDKLSN*
Ga0079957_100289243F020159AGGAGMMELILAFVAGMIVMDFMYAWRMGIPQMLWYRFKHRNDPKPNFEDKESV*
Ga0079957_10028927F009397N/AMSKYLLPMARNTVTGQTVKTQDLNGLRYTLQQRVLAESAADQCAAKMTARTGDQWQGFVREYTPRERT*

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