Basic Information | |
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Taxon OID | 3300005805 Open in IMG/M |
Scaffold ID | Ga0079957_1002727 Open in IMG/M |
Source Dataset Name | Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15323 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (69.57%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Wichita, Kansas, USA | |||||||
Coordinates | Lat. (o) | 37.7330997 | Long. (o) | -97.7990663 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003067 | Metagenome / Metatranscriptome | 509 | Y |
F030434 | Metagenome | 185 | N |
F068843 | Metagenome / Metatranscriptome | 124 | Y |
F085231 | Metagenome | 111 | Y |
F090388 | Metagenome | 108 | N |
Protein ID | Family | RBS | Sequence |
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Ga0079957_100272717 | F068843 | GGAG | MSYTDEDIAFLIKIGQITEAPVKETKTKAPVTEKIEE* |
Ga0079957_10027272 | F090388 | AGGA | MALLRINCRVCAKLGKGMQTHKIVDEFVNLPPNVVCVQCLGCGVMGIEMLLDTQRAKDEDMLND* |
Ga0079957_10027273 | F030434 | N/A | MAQIVQVILDRSQELQAAASGFARSTGEKANTPDHAGRYNTKINFHEFVAEHSEAAGAEIAVAQYMGIRNFIPTVNTFHDAPDIQVGNLGFEVKWTKYINGHLIIHKDYPRLTDVAILVCNKSPVYQIIGWMPVLWAKKAKYYNAADGNFWVSQRELFEMDALRKSVYGITED* |
Ga0079957_10027276 | F003067 | N/A | MTAAQSLIAIAIGLCTLMGFAAGMVRHLVKYYLSELRMDNNGGHNLRGRVDRIEAKVDSIYEMLLQR* |
Ga0079957_10027277 | F085231 | AGGAG | MKDQLIAAGVSYLRHAGTCAAALYMSGVTDPKTLANAFIAGLIGPLLRGLNHSDKTFGIK |
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