Basic Information | |
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Taxon OID | 3300005805 Open in IMG/M |
Scaffold ID | Ga0079957_1002101 Open in IMG/M |
Source Dataset Name | Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 17703 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (20.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Wichita, Kansas, USA | |||||||
Coordinates | Lat. (o) | 37.7330997 | Long. (o) | -97.7990663 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F012672 | Metagenome / Metatranscriptome | 278 | N |
F039597 | Metagenome / Metatranscriptome | 163 | Y |
F057881 | Metagenome | 135 | N |
F065712 | Metagenome | 127 | Y |
F066704 | Metagenome | 126 | N |
F075866 | Metagenome | 118 | N |
Protein ID | Family | RBS | Sequence |
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Ga0079957_10021011 | F066704 | N/A | VEFWKKEAYIIAEKVTGGNPIYRDLVSHIYLLVYDIDIPAKDLPRLFARYAYNQYNWRDSQFNKQYRLNDPLPELDNKEADQEYHETEMQLFLDSYMEKSPDDDQELFTKEITKMHLMGMTYREIRNETGISLDTIHLAIKQFKNDLFITYNHSNRDCQSSPEFQSPGLQAI* |
Ga0079957_100210120 | F039597 | N/A | MTLGYNDRTCTNGKGGIKSVLLFPLGNVSASTIADNEITALTVTGEVFLYKLKSNLSSYTAPIRVNKGNGTLWYEQTLTMILASDTKELRSEIHLLGQNEVVALVEKADGTVVALGFGEG |
Ga0079957_10021014 | F065712 | N/A | MQAHISESLAGLDKGLIEKFNLTPYQVATWDTVFMGMYREEDLTTLATHLGASTIVWFGSDAKDLPDDWAKFVQDSVNIAVSHQVLETLASKGIEAIWCPINAVIPHHWPLVPNGDKIFWYSGNAPEYYGQELINEIKERINIPIIRAGHDTFTKEQLVDVYSQCFLNLRLTPHDGCPNTNIEMGLMGKRSIYNGDLPASIPWQSVDDICQSIMREYSTRHVDNVYISNIYHNFVNYERMSTLFI* |
Ga0079957_10021016 | F012672 | N/A | MAYSDEFIKHLEELAHLYIEECLNHKKEMISNKGDIVLVLDRHIPTIDYFLRIWIPIVRKDKTIHRDTYYTWLNSDDKLKSDTIKKIDDLFKGLAIDIVGNEGKGIFYAKNRLGMHDRQQLETKNVEKFDFE* |
Ga0079957_10021018 | F057881 | GAG | MKQLEIKLPTAISDCTPEQMTRWLMMADAMKDNKDDITQFLIFQCQLLSLFSGESINKIKRADVDSIQDASTHMLKLLTSYQYQEPKEYITIEGQEYRLEKNFGHVSTGQIIDLKLIEDISQDPCQALAIMYVEKGMEYCQEDDRGRTLNPNDKRYNIFKEHFPGDEFLNFFSFFLDLSEKRRLAILGIQMARQRMEMMKVEQDLKIQSGLIGQLSYIDYPKRWESVWTKLHNSLM* |
Ga0079957_10021019 | F075866 | N/A | MADFDFLEDFGISASEAEQPKNVYDKFIIELSNKLAEEFRNYTKKVAQNTGALAASIIPVPTGKLSFRLDADDYFPFVDQGVNAVGTNNYASQFSFRYPGVSHNMATAISQWKGLDMSHAYAVASNIKQRGLRPKKITQNVINNDVLNRIALDLAEVTGLMFEITFDKNTETWR* |
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