Scaffold Ga0079957_1001005

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1001005
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25966
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (86.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001530	Metagenome / Metatranscriptome	676	Y
F002766	Metagenome / Metatranscriptome	531	Y
F007521	Metagenome / Metatranscriptome	349	Y
F093776	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100100512	F093776	AGGAG	MSFASDISAVSKTATSQAVNGRSRLAGMYFTHTVTPATITLKSGGASGTTLMTMTSPAVAGSQDMIIPDNGILFPDGIHITLSSAEITSVTLLFVGGAAA*
Ga0079957_100100513	F001530	N/A	MQITKEFLEAEIAELQKEAGKAEVFLLQSKATVAAYQMLINRLEAPEETQEQ*
Ga0079957_100100520	F002766	GGA	MLEFAEAVLKEIRKLQQDSEAIVLNGTIADMERYRFMMGRLEGLKMVEQSVRELVKRATQNDF*
Ga0079957_10010056	F007521	AGGA	MAGRGMGAATKGGGAVGTGPRNKMLKETSQTTGPVMMKNGGAVNQHKRMAMGKKLKKGGMVK*