Basic Information | |
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Taxon OID | 3300005805 Open in IMG/M |
Scaffold ID | Ga0079957_1001005 Open in IMG/M |
Source Dataset Name | Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 25966 |
Total Scaffold Genes | 45 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 39 (86.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Wichita, Kansas, USA | |||||||
Coordinates | Lat. (o) | 37.7330997 | Long. (o) | -97.7990663 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001530 | Metagenome / Metatranscriptome | 676 | Y |
F002766 | Metagenome / Metatranscriptome | 531 | Y |
F007521 | Metagenome / Metatranscriptome | 349 | Y |
F093776 | Metagenome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0079957_100100512 | F093776 | AGGAG | MSFASDISAVSKTATSQAVNGRSRLAGMYFTHTVTPATITLKSGGASGTTLMTMTSPAVAGSQDMIIPDNGILFPDGIHITLSSAEITSVTLLFVGGAAA* |
Ga0079957_100100513 | F001530 | N/A | MQITKEFLEAEIAELQKEAGKAEVFLLQSKATVAAYQMLINRLEAPEETQEQ* |
Ga0079957_100100520 | F002766 | GGA | MLEFAEAVLKEIRKLQQDSEAIVLNGTIADMERYRFMMGRLEGLKMVEQSVRELVKRATQNDF* |
Ga0079957_10010056 | F007521 | AGGA | MAGRGMGAATKGGGAVGTGPRNKMLKETSQTTGPVMMKNGGAVNQHKRMAMGKKLKKGGMVK* |
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