Scaffold Ga0079957_1000842

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1000842
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28114
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (97.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018333	Metagenome / Metatranscriptome	235	Y
F100422	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100084215	F018333	AGG	MDPFTLIAGASALFSTIKNAVDSGHEMMDVADRVGTLFGRIAQITQLTSGKRKKKLFQSQAEYEAEAIKLYTLKQKAQKLQLDTRNLFVSVYGVGAWSAIQKEIIEARKEAQRQILAAQLEAEENRKDLIMGAWLIGAVILFAVCVGIGMVLFTHK*
Ga0079957_100084216	F100422	GAGG	MAIHETKLAIDSTIATGAITMPLWMMELQGWIGFAIAVGGLVLVVIRIVLAIRDWHRGS*