Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1000690 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1000690 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30691
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (92.31%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

30691

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (92.31%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001106	Metagenome / Metatranscriptome	776	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001464	Metagenome / Metatranscriptome	689	Y
F002501	Metagenome / Metatranscriptome	553	Y
F006841	Metagenome / Metatranscriptome	363	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100069020	F006841	AGGAGG	LATTVYDVEEIELQNGAKVKLKPLSIKQLRKFMTAVQKTQESTDENATLNILIDACAVALETQLPDLVKDRDLLEEALDVPTINRILEVCGGIKMDDPNLIAAAVLAGQN*
Ga0079957_100069022	F000258	AGGGGG	MPNYKLDAMFEIRKFLWDKLKSTNIFNQYEYYSDNLDETIVPIVPVQQAPEMNQFLSGKKHIVYDKIGISYENNWLICCEQILFTIYAIDILDIVEIRNFMMDQFRRMDDSAKDLNYWGSLSDKFKFHSIFIADMSPIAPSEELQGFFAADIVLEVKYSRITDNNGRFA*
Ga0079957_100069024	F001229	AGG	MNNIVDAVLSMKLDVYRQTDEQDPDTGAIKKQWIFYKTVPCHVKGVITNSATTRSSDKQIMGNKYFNDQILQVRTSERLTLREKITNIRDSESNFIWTELNYPNDTPTVFEVMGTTPLTDPFGKVVGYNSSVKRSENQQIGI*
Ga0079957_100069026	F001106	AGGAG	MSFETLKVKELKKIAEDFAVDTDNLKNKADIIAALADEGVTWSVYKQAMDNIEDAKEDAPEVLPRFDQTKELSKEEVLVRMTRNNFRYDILGYTFTKDHPFVAMSEEKAQQIFDKEEGFRLATPTEVREFYN*
Ga0079957_10006903	F001464	GAG	MVRANRKNKTKRFSYFFLNNKIHKVLSYSRAKDELVAWCYPDKKRVLYSYSQVVKNMENAYSTKQVAQVLNKHKITIEDYILEGKIKYPQKVYPIGNPESDWYKFMYSESDIMDIHEFILESGYSKNMPSKTELKALLKHNTILYTKTTEGSFVPVWKAD*
Ga0079957_10006904	F002501	AGG	MMKCGKCKGRVFVDRVFSQKLHVELFCIMCGKRWMINKDTSPLGRWLEQTEKTKLKDLAISS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1000690

Overview

Ecosystem & Geography

Associated Families

Sequences