NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1000690

Scaffold Ga0079957_1000690


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1000690 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30691
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (92.31%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001106Metagenome / Metatranscriptome776Y
F001229Metagenome / Metatranscriptome741Y
F001464Metagenome / Metatranscriptome689Y
F002501Metagenome / Metatranscriptome553Y
F006841Metagenome / Metatranscriptome363Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_100069020F006841AGGAGGLATTVYDVEEIELQNGAKVKLKPLSIKQLRKFMTAVQKTQESTDENATLNILIDACAVALETQLPDLVKDRDLLEEALDVPTINRILEVCGGIKMDDPNLIAAAVLAGQN*
Ga0079957_100069022F000258AGGGGGMPNYKLDAMFEIRKFLWDKLKSTNIFNQYEYYSDNLDETIVPIVPVQQAPEMNQFLSGKKHIVYDKIGISYENNWLICCEQILFTIYAIDILDIVEIRNFMMDQFRRMDDSAKDLNYWGSLSDKFKFHSIFIADMSPIAPSEELQGFFAADIVLEVKYSRITDNNGRFA*
Ga0079957_100069024F001229AGGMNNIVDAVLSMKLDVYRQTDEQDPDTGAIKKQWIFYKTVPCHVKGVITNSATTRSSDKQIMGNKYFNDQILQVRTSERLTLREKITNIRDSESNFIWTELNYPNDTPTVFEVMGTTPLTDPFGKVVGYNSSVKRSENQQIGI*
Ga0079957_100069026F001106AGGAGMSFETLKVKELKKIAEDFAVDTDNLKNKADIIAALADEGVTWSVYKQAMDNIEDAKEDAPEVLPRFDQTKELSKEEVLVRMTRNNFRYDILGYTFTKDHPFVAMSEEKAQQIFDKEEGFRLATPTEVREFYN*
Ga0079957_10006903F001464GAGMVRANRKNKTKRFSYFFLNNKIHKVLSYSRAKDELVAWCYPDKKRVLYSYSQVVKNMENAYSTKQVAQVLNKHKITIEDYILEGKIKYPQKVYPIGNPESDWYKFMYSESDIMDIHEFILESGYSKNMPSKTELKALLKHNTILYTKTTEGSFVPVWKAD*
Ga0079957_10006904F002501AGGMMKCGKCKGRVFVDRVFSQKLHVELFCIMCGKRWMINKDTSPLGRWLEQTEKTKLKDLAISS*

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