NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1000608

Scaffold Ga0079957_1000608


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1000608 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32332
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (16.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009003Metagenome / Metatranscriptome324Y
F011136Metagenome / Metatranscriptome294Y
F027408Metagenome194N
F043894Metagenome155N
F079655Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0079957_100060817F079655N/AMTTVKKETAIRRLNKALRKRFQGASINISWAEMDNFFLKSAQMIEMNHIHDAYNEGYTDCKAGLPNKTQIEDGQD*
Ga0079957_100060819F009003N/AMKAKDKAWQLYSNYFDIVEGEEQQGQLAVVHMKAINCALYCVDEALINAPTDIMQDFDGTGEYYSVKAYYHHVKNEILRLNGKTQKELDARAAQRGATKIA*
Ga0079957_100060830F027408GGAGMKHYDIAEENKLLRQLFVLTSKRSMRPSMQDNMDMRIIFEQLHLLTDKDEYKL*
Ga0079957_100060838F043894N/AMKNSKLNLLIESRVGSKLALLRAMQRSNTPIVRKTLYNWMHDSGSIKVSQLVNLAKALDMPVTELVEHITIKHEGDE*
Ga0079957_100060841F011136N/ALDCIDYEINKNYKGWLQKATGLAHDKSKGSDLLHEVLARLMDRPQEDVQDIVCNGKVSSYVNRALWLSWHSNRSDYAVKYRKYYDVIIDSNIDDGKTDETWIGAFIDGEYLFNAIGRLNEFDAILLRLYSKPDFDYKQLSADTGIPYNYLRTSIHRALKRIREYVQLQRAIAHSTREA*
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