Scaffold Ga0079957_1000495

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1000495
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35471
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050379	Metagenome	145	Y
F073074	Metagenome	120	N
F096875	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100049524	F096875	GGA	MYRIIKMPTTGRWKITVFQGAVAKMNASYTHEALPEWIRKDIALLSMVHNMDDIPSIGHRVGDAYWLTPKDKDESCTGI*
Ga0079957_100049529	F073074	GGA	MDIITKTAKDAARLLNAIRAQYIIVLPTGEQIIEGDLKLHVPDATPSKKKRAPSRNPLGYLRGHIMPYLKPMKVGDVAVIPVPNNSDVKEIQGSCASMANVLWGKGNYKTMRNMNTGNVEVLRMG*
Ga0079957_100049531	F050379	AGGAG	MTSNELTDAQLQMEADDLIAKYKDEIIDQGDWWYGTDTHSYNIHCLDDECDGWYNVNVYKVDPVTGMDNYEWMIDLPRVFLGVPT*