Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1000240 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1000240 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	47207
Total Scaffold Genes	64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	49 (76.56%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

47207

Total Scaffold Genes

64 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

49 (76.56%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040597	Metagenome / Metatranscriptome	161	Y
F043934	Metagenome	155	N
F054848	Metagenome / Metatranscriptome	139	Y
F080024	Metagenome / Metatranscriptome	115	N
F091944	Metagenome	107	Y
F097217	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100024020	F040597	GAG	MRNRNVAAGVWEIIDVKTGERISKFRARKRADVDRYLKMAELGLKRPASDFEARYLTDWEDTPSS*
Ga0079957_100024033	F080024	GAG	MMSVVATLLKNKAPQSAWLVKVKDLASGEERYAAHTTLGAAKKTAVMFTNSLLDIDRTRLPWEQDEAQKSEGIQYLKAEVDA*
Ga0079957_100024044	F054848	N/A	MTTASSQQAAALYTAGKSVVEVAQELGITYGKARKLIADSGTPIRNTSDRLKGKTRKSK*
Ga0079957_100024058	F091944	AGGA	MAYTGVFEAPKIIPSKFGLLTVVKPDTSIDEDKWVRGFSQEWETTPQFVTNYDDTDSTSEQIAAPTVNYFDEIKPFFIEVDETRSTLGFSGIDRIARITRQLEGVTQKALEAELWDGAIRIGESHDNKALVSSTVTTLNSGTALSPRRAVALLEHKIATSSPAGEQGVIHMTRDIAALLAADGNLFYHTEGEDHLQTVGGTPVVIGSGYSGTGPTGATGATATDTNKWMYATGTVKVLLGKPDVVNDNLAQGYDVSGNANDLRLKAIRPAAVYFDPSVHLAVRVDLTA*
Ga0079957_100024061	F043934	GGAG	MSRLIDISTVDSRALNLKTLLDKVLEKVVEVYEEYNVPLPSRQFWTMGEPAIDCEQVVVSFIQVYLGRPGDEASEPQRCQMPRSAVLTISISREIPVVGVNGKAPTGEKIQEASEIAAVDAWMFMELINKLDQWKEEEGDFGLGVIATADSTGFDGGFQTTAMQLTIAVP*
Ga0079957_10002408	F097217	AGG	MSSTAVRTTVTEVTVTKTVRHLNKSVDAIVKAFAKTKEDLKVLEAQKKALEEQIRNLMDGASVGYINGVKRVEILDRKLTKVDRKKLQEAYPEAYEATLTTTEYTIVDAE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1000240

Overview

Ecosystem & Geography

Associated Families

Sequences