Scaffold Ga0079957_1000228

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1000228
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48509
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (33.33%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014513	Metagenome	262	Y
F015061	Metagenome / Metatranscriptome	257	Y
F023326	Metagenome	210	Y
F048800	Metagenome / Metatranscriptome	147	Y
F056542	Metagenome / Metatranscriptome	137	Y
F058252	Metagenome	135	N
F061533	Metagenome	131	N
F075040	Metagenome	119	Y
F101028	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100022816	F101028	GAG	MPAEGSVFDGFTSIIAQDADTHPSYLPESVVSESVNRTFRGGINRTRPSIRNIPIMAGDGESQTIVNDILGGNFQGAYPYRATNLRTSDGILLSVSGIIYFLKIVNNRAFAYKLIEGNDPGMMHTWFVQAEDRAYIQNGYQNAIAWDGVLGTLIASEIQDGDYCEIVSVGTTNFTLIGAPSNTIGVKFTAIITDTQKGIGTGTIKIPAYRLNPYLAKMPIGTIMEYAFGRVFVADRFNQIYASDIIYGGGFTDTKNTENFTEIGYWAEGGAFSTPAMMGNITGMKVMPQIGTNLRGQGELVVLTGNGAFSMDVSIPRDQWNLSNIQRISLLGRGCTSPYVGLANSELWFRSHDGWAFYSNSQSEFARYFSLRKLSREVNKWVENDTPWLKQFASTMFFNNYLISTVAPQTYRAEGVEGLNRYHRGMVVLDLDQSSSPAPDAQLQFRWNGIWTGIRPTQLLTALINSEKRGFGFSFDADNKNRLYEFTISQGDDYGPNGSRQIESFFTTGRYDFNRSGATNKFLRKKITGGEMWMSEIKGEVNSSAEFRADSNPCWSELKVPTTYGCDPCSPKVTECFPQRGGNRYKRYKFNTPDPSECNDLAGIPSVEGSEFQIKVNLTGAATVDRVRLMANIKNNDDSPVGDCPEENQECEPFLCCQEKYWNYNIVN*
Ga0079957_100022817	F048800	N/A	MDNQSSSPALTFPNVPDDFCPTGNWQNVFQVFIDEVLTNGTINVPGLGDVTPAQVAQINEDLADQQSQISALDTRVDALEPAVKARYGNIGSIPVGDSIQTVSFAALPSATYGISITPNCNATIGTSATPLFALVDGSKTTTGFSIRIENNLSQITNVDWMAVHAS*
Ga0079957_100022818	F056542	N/A	MTPLKGTDPKLVSGGSPTRGMIREGMGNMNPPNTGKNPYSSAPMPKSGKPVGGK*
Ga0079957_100022819	F014513	GGA	MADTLEEMVELVKGFAGDSGTCSYERGVKAVNQARRLLWNKRGWTSIEEYVQICCVNDCFTLPARYEQIKLAWIGDNSASLADEWFNATNAFALQAGNSCHRGIVEVGGLHVLFRDYTTHPYQIGVMAEEAEDIGVELMFEAQDQYDTYHKVKVTTANPPTLAKSDLLVKGIRAVTKPITKGRIRVYAYDTALEAKTLIAIYQPNDAHPTFRRFKAPKTCECITLYASKKYFDLTDPKELVEFIPDAMIYAVLALNSRENRKAQEFLQNLSLAVQEQEKEMEGLEIPTCAPLRIANYSRADNLIGADILSPTPNDYFLYR*
Ga0079957_100022824	F075040	N/A	LTIIGGLVVSTLLDGTTPVHIKLMKDTPTVKKETTEKPVVQNTELQREIYLRLVSSAAADGRFLLGNLPNAQAVVKQGDHLKGVAEILAKCYEQ*
Ga0079957_100022827	F061533	N/A	MSNQLDGIEQKDIIKRVTGKVTKLWEAKTFTGPKGEFVIQGGDIEIDGQTYGLKFFNNTQEQSIKGNVVTLSSVRGKHGLTGVSLEHESYDGKNGKVDRDIIKVTATGKVEFDRPSEEPARVASTPKVIVTDNPEKALDEIVELHQYIDSLVRMAYLGKITDEETLRSYVSSVFIEANRKGIHYSTKTEAPKKEEPVKDETDPDDWGSVIVPSGSHKGKKLAEIGKPALTKLYEYYLEKGFTTPFAKCVEKAAEDLNLDAPAEESDDIPY*
Ga0079957_100022830	F015061	GAG	MSEPTQQNETSKAVMEAFTFIKSGDETLNERVHAMGSLLHTAAMMVIRSESRKGEGFEAIKYLELAFMYYQNSQFRKRFDEPEKEKDDQPLLFTP*
Ga0079957_100022866	F058252	N/A	MNTTFESRIICEGTEVTNTPEKILFRQKFNQCWVKKSDIRLHETIGHLDGEKMIRIVVPEEVANTLELEGMLD*
Ga0079957_100022867	F023326	N/A	MSRVFSSNKGIRRYGIQFPENMDDLGIELYCYAISRGEYGKDYCTKQNINLSDFKLLSPHEHFINAVKLQWPTEVSIVNRGYTNTQLLRTLEELCNNQDICLAGAASMGKSFPVGLWVYLDWCAAPHCTSSWVATTTLGASEDRIWGIISKLWKSARVQFGKLIDYRHMIVWGGASNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRIRLALDELPEMELGAITAKVNLSANNDVTFIGIGNPSAGDNPHTRWAMPKGASNFDAVNPDMDKWETETGVCLFYNGMRSPNFTAPANEPSPFPFLMDRKKQEIMLKQCYGDENAIDYVRNAIGWWPKSGFAQTILTADLIRNADTNEEPLWDSEGFTKVAGFDTAFTIGGDRCVLTIAKLGFVRGTRNRVMWLEDQKVIQLSANAAAEFEIQLATEVVGFCRTAGVQPSKFGMDVSGDGGRVGQAIIREWLRFDAGGAAIALISSMGKPTDRIAAEVDKRPCKDVYDRLVSEYWYSAYHGFKSRVLFGVAPSSDLSRELCLRRYTIKSKKISVETKDDFKGRTGFSPDLADSYLYCLEMARRNGLVFIGNDKPVPTNRFWARDEVSIDTTQDDDYGSDDNGDW*