Scaffold Ga0066903_105553816

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0066903_105553816

Scaffold Ga0066903_105553816

Overview

Basic Information
Taxon OID	3300005764 Open in IMG/M
Scaffold ID	Ga0066903_105553816 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	664
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama: Oeste
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005651	Metagenome / Metatranscriptome	394	Y
F025580	Metagenome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066903_1055538161	F005651	GGAGG	MKPDERSFRIALVADGYVNPPPGGLDAVAVAAQTGWGVMQLPADDYPAEIAGPLLAEVAEQVEEFSRHGYGFVLVGERAGLAEALARVGVPVPDGISPGTPAQLAGFLDGQPAPRAGWDA
Ga0066903_1055538162	F025580	N/A	VAAAISVRVTKGEDVVLVGVEGSPSMGVTVTSSDPLRGGRPEWPEGTAEHVSGEGIFVEEIRKALARRGIGFPRVAGETHALPGHDEAAQRAGLESALEG*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.