NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066903_103902609

Scaffold Ga0066903_103902609


Overview

Basic Information
Taxon OID3300005764 Open in IMG/M
Scaffold IDGa0066903_103902609 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)800
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000145Metagenome / Metatranscriptome1927Y
F000257Metagenome / Metatranscriptome1447Y
F000792Metagenome / Metatranscriptome890Y
F009386Metagenome / Metatranscriptome318Y

Sequences

Protein IDFamilyRBSSequence
Ga0066903_1039026091F000145AGGAGGMEQKETTVSGKNRIMIFGPKTDGTYVVEFRTAAGEALAISIPRTEASVVRHFQERMPYG
Ga0066903_1039026092F000257GGGGGVSHFTLRWDIIPHLGKSSPVELALPPEGFRSVLLEIGAFHRERRIPVRRGRSPHEVKQVYIRFCFPDAATAEAFHNRFGGECLTHAATVWREEEEEWSKKKRR*
Ga0066903_1039026093F009386AGGAGGMAPTSARLAYVFGMVLAVAAIILGITTHNLAAPSASLIYRPDLPLLY*
Ga0066903_1039026094F000792GAGGMRERVLLFSLLGLVLAITIMLVIEPRAVTWAVGLIE*
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