Scaffold Ga0066903_100471094

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066903_100471094

Scaffold Ga0066903_100471094

Overview

Basic Information
Taxon OID	3300005764 Open in IMG/M
Scaffold ID	Ga0066903_100471094 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2111
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama: Oeste
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001757	Metagenome / Metatranscriptome	641	N
F004039	Metagenome / Metatranscriptome	456	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066903_1004710942	F004039	GAG	MSRETRRDIVLVVTLCLVSAVGMASVFWGCRFLAWIAIAISDLYLLIVLLFAALRAEDDAFLDRHPWITHFFPRKTAGILVVTLLLLTILSGFAGLYVGGKVFPAVKTPLDALYTSFFILGFTDYSPKPGYGQLVVIGELVSGVLLAAAVFPMHISRISTFKSR*
Ga0066903_1004710944	F001757	GAGG	MTCPQMIHSSQHGCINPNVTHKGRAMMRVLKALQDRATTGAGKSLVLPEPRRVRFLIRGEGRVSAGAVTIECCPDSTKAGKFWMELATIAVPADNGLTQYYTEEASGLFRARISRPVSNGTVTVTPLVSRGPPDRPDRTKIV*

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