Scaffold Ga0066903_100353576

Overview

Basic Information

• Taxon OID: 3300005764
• Scaffold ID: Ga0066903_100353576
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2377
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008444	Metagenome	333	Y
F010880	Metagenome	298	Y
F081177	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066903_1003535763	F008444	AGGAGG	MPVQHAYTMKAGTKSKLLLVYATSADSASGKTGLTKNLSAGSAAYIREGDSAARRVPIVGGRVSEWGAGALAEVDPELLPGLYQFGAPDEMLAEGSARAVLLIRFPDAVIKPVEINLVAYDPQDAERIGVWSLAGHKRHEFLRQALPRFTEMELALGEQAEKELKAKLNAEKKS*
Ga0066903_1003535764	F010880	N/A	MSYALKKGTTSKIVLVYALDATDMRSGKTGLSSRTPDSSAAYIREGEAEVRQIPLVEGRLGEHRAGSFVEVDSKLLPGVYQFGVPDEMLAAGAETVTLMLKLPGAVIEPISIHLVAYDPQDADRLGMSALGPEGRRAALRGAFPRLTAKELGDA*
Ga0066903_1003535765	F081177	N/A	MLDEVRQVGNTPRIATRSAQPYRRHIVGLPLQRSLFGQAARAATTIGLPGLTSELDFPAQLDGNGNLFLDRSQVAALTKALGSWFSPETLERMHTTHAAACDALVDASENAARVAASHDGAARKLFEDLANRMA