NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0066903_100138587

Scaffold Ga0066903_100138587


Overview

Basic Information
Taxon OID3300005764 Open in IMG/M
Scaffold IDGa0066903_100138587 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3451
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013366Metagenome / Metatranscriptome272Y
F019919Metagenome227Y
F063044Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0066903_1001385872F063044GAGMADPLEKACSLVGRFQYHFGRVEQKIDQAVIKLLDLDEKAGPVVTGSVAFASKVNFVRTSAYQQARNEEDKQFAEKTCSDVFKINDVRQVVIHSSFEPASDGSVQFRRTVAKDGRIRVDDQSWNNERFSKHYATMTSLEADLDKLIGLIKPVKQVPFDWYVSWGSYRGSTPLTLK*
Ga0066903_1001385873F013366GGGGGMVSIKEELELAKAAKAAIKALLTATSKPAALATLKDAYRAAVLNFSGEGLLNEARGIVGIALSNVMHGVPTEDRINKAKSAIDTWINNLELAAPSISMAQGHHDD*
Ga0066903_1001385876F019919GGAGMSRMLFVALTLICWASPIKAEILRLSCSGTMKAEEEQAKPHAITKMELIINVDAGVVTGFTEITARIDEINANSVLFNGTTIHPSGAEWSVHGAMDWITGSLGATVIWFNRRTNDLLMTMNYELICKPAS*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.