Scaffold Ga0066903_100049307

Overview

Basic Information

• Taxon OID: 3300005764
• Scaffold ID: Ga0066903_100049307
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5102
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000461	Metagenome / Metatranscriptome	1108	Y
F000788	Metagenome / Metatranscriptome	891	Y
F006474	Metagenome / Metatranscriptome	372	Y
F059594	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066903_10004930711	F059594	AGG	MTRKPGSLNELDRAMLRATLAFPGTAPAVFTNENVRGLLGADKTCMTCPRCGNAVPGEGGKLCQEYRCDACSYAFAKST*
Ga0066903_10004930713	F006474	GGAGG	MRGAENEEPEMSFRRGYQQGAIEVFYAIERFLDPATREVLQAWIEKDVFMWRVKAMLGHPPNWRLNMLAGSRPAGRPLDRLDLRYAAGAGL*
Ga0066903_10004930714	F000461	GGA	MGVDHHSQAAPMTALTAMDKLLFWLGIGAAQKGAGSKALDRRNWALSFAVGTLLALLIAVGILILLVSQQ*
Ga0066903_1000493076	F000788	GGA	MKPRTVYEKAVQDFTETARRLARLNQHFRQASFAEFEMLMVDDEALKRYGLPKEMVERALLEVYQTVVLDQQR*