Scaffold Ga0066903_100028312

Overview

Basic Information

• Taxon OID: 3300005764
• Scaffold ID: Ga0066903_100028312
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6250
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051757	Metagenome / Metatranscriptome	143	Y
F070614	Metagenome / Metatranscriptome	123	Y
F099630	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066903_1000283122	F070614	AGGA	MTNLEPVAQDKREYLLAELRVAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVPHEQEAAP*
Ga0066903_1000283127	F099630	GAGG	LARLLSRQQMLTVTDVSASVFDRMINRGGMALTFGVPRAIVRDRYVSTDPVYARAVIEFGRQFRVPQPVIAALVRLDNITVLDGIVRAEAHPELQLGLALIQGADQMQLMCGTDDELRAFLVGPPLEGRLRRPARLDQVTVINLTGLILNIHRQAAKKKIDLGVPLFMTPDNPRYQELRRELLEIREADTKTVQKAAAFAALRERITSHVAIQ*
Ga0066903_1000283128	F051757	GAGG	MKEVRSRLNRDYRLQNIGSRLQQNLTKAVLSGAKVIERVLVDNLTETAAYKLEYDQLREYVFAGKRDQLWNVIPASIQTPQELQGFTEHLQRNLNSRDRWIRYFSERTLAALIGGQQ*