Scaffold Ga0078261_114331

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0078261_114331

Scaffold Ga0078261_114331

Overview

Basic Information
Taxon OID	3300005763 Open in IMG/M
Scaffold ID	Ga0078261_114331 Open in IMG/M
Source Dataset Name	Algae and Fungi communities from freshwater lake in Auvergne, France - sample CCAP7CHYT day 4 of algae bloom
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Institut Pasteur, Lille, France
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3179
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae → Eupodiscales → Parodontellaceae → Trieres → Trieres chinensis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Algae And Fungi Communities From Freshwater Lake In Auvergne, France During And After Algae Bloom

Source Dataset Sampling Location
Location Name	Auvergne, France
Coordinates	Lat. (^o)	45.495847	Long. (^o)	2.887922	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F068864	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078261_1143313	F068864	N/A	MVQVRTPRQQGKTRTKKSLHLLLPISVLFVGFIGFQLFSSAGLLQSFFDLFVTGNKAQQDPLGISTLRAQVKRLEDAIAGTSTSTTPTKTIQTLPTCRSLMNAPNSPVADGSFLTNRDSTPNVWTLRADGSRQLNLPFTCQLHRYTASEARQCLAKRHVSFIGDSLTRYQFISLAYFIEKGKYPPRFGKEKNCTHFNEQGEATCSPSAEPNVCMEGDWKDFQVYHRDLGGGIDGGTFNGRFQCLCARKEDDPYVPVENFLYVSDDVGASEGGKVILSFISELGWGSKPNPVRGWNFTGCAYKGTCRMTEKDNEHLIGRQRAKDFDWSAPLYQALNENSSTSSLHHILPDVDIVMYNRGLRGMLTEDQVDTIMPLLHHFAGGERGRCFFKTTTTSPDSKRGFRDEEMKTVRDATIKSGCVIFDASHLTMAFYGLPQMHPQPPKQENGKLWNYREWSSVFWDAYHFTPWVYEELNNMFLNVLCNAKN*

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