NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078205_141121

Scaffold Ga0078205_141121


Overview

Basic Information
Taxon OID3300005760 Open in IMG/M
Scaffold IDGa0078205_141121 Open in IMG/M
Source Dataset NameAlgae and Fungi communities from freshwater lake in Auvergne, France - sample AST3 at day 1 of algae bloom
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterInstitut Pasteur, Lille, France
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1655
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Algae And Fungi Communities From Freshwater Lake In Auvergne, France During And After Algae Bloom

Source Dataset Sampling Location
Location NameAuvergne, France
CoordinatesLat. (o)45.495847Long. (o)2.887922Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092089Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0078205_1411211F092089N/AMSDLSLFVSQDMKLLSTIGILLALSISFAFAGKSTFKFPGGLSKKNYVPRNIGKRILKGDSRKGSIVKKSKKKGARASTNTEPTIIQSYVNWAVCLHDRTSNKACSPQLGVPKGYYFLDPFVVYSSCSNITIPVRKCNVPVDPKGEPLTVVIPVVGDVWIDYDDNPKGGICNESRPTGNDPVLLYPKTNVATDFFKYTQLPYAFVNGRSLSMEYIIEDEPFYLKSCSNKVQCCDDCDVPSCGDCGGVDAYPTIGYSATDTSRWKPGEKRYYQWGYGDEWDCDACSDCSMGRVELTAVEKK
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