Scaffold Ga0078117_1110154

Overview

Basic Information

• Taxon OID: 3300005758
• Scaffold ID: Ga0078117_1110154
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3175
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020680	Metagenome / Metatranscriptome	222	Y
F023832	Metagenome / Metatranscriptome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_11101544	F020680	GGAGG	MNTVNLAAASVADIKTLVSTGTVKIADAIVRVDVVLARRIAEGKRARWTRLREWLVREEAQQECVNS*
Ga0078117_11101545	F023832	N/A	MANPTRKMIEVYEMLKDGKPFKFETLVKRLGCKPVTAMVLICALKRDCNAEIETIRDGRKVESYQLHNAAAIASKMVGKTKAVKAPKAAKVAVLKTKTVVSRKPKAAAVDDGSVPTIEVEEIDSDAELASLKAELGLSESYSE*