Scaffold Ga0078117_1102075

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0078117_1102075

Scaffold Ga0078117_1102075

Overview

Basic Information
Taxon OID	3300005758 Open in IMG/M
Scaffold ID	Ga0078117_1102075 Open in IMG/M
Source Dataset Name	Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1300
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.411221	Long. (^o)	103.905587	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F044440	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_11020753	F044440	AGAAGG	VRHAARRDLNDGEISAAVKAAGFSLIDYTKAGLGIPDKLAIKPLPQVGPNGERVFFICWLEIKSKSGKLSETQEIARSVWEPRGEWIEAREPEQVVKDLWERYNAKVKPEAMR*

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