Scaffold Ga0078117_1100657

Overview

Basic Information

• Taxon OID: 3300005758
• Scaffold ID: Ga0078117_1100657
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2392
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067450	Metagenome	125	N
F075991	Metagenome	118	N
F082207	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_11006571	F067450	N/A	AGSIRCIMLSLLILIPIAACAIVFLHYCIGSPIQGEYYTGRIFSFYGAFISKRYLDFEAKEKTRVWAKYNEWKTKRDEYLNQQLENKTAEEADVIYKDYLQQVETVYNDTENNMKNNPWSMAGACPICFGTWVSIFTFTFFIIFVPLPWWYIFIGTPAAVIVSRYIKLS*
Ga0078117_11006573	F082207	N/A	MNCVAIAVNKLFPNQDLTAFIDRKIGVSMGDIQRMIPNELSVWPVYVNHRKCLNFDLIKQLPKTEHYIPLFLFKSLMSDRFKLHCELALWDRDNITIDDIEQDADEYFEYHKIIQVAALIKFETHEILIARK*
Ga0078117_11006574	F075991	N/A	MTNDEKKAALIAKVGEQRVNELTQNIWLLLGSLSTAKYAIAQFEPTKLKFEMKKRFLDLRTAINLFTNTFEKAASAEEREILNDSTYENVAVIAELIAMGLTLPPSQTEWYLNECKKVLLSAYELRSDSGE*