Scaffold Ga0078117_1099841

Overview

Basic Information

• Taxon OID: 3300005758
• Scaffold ID: Ga0078117_1099841
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1192
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012016	Metagenome	284	Y
F066489	Metagenome	126	Y
F100665	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_10998411	F012016	N/A	MKNMQQTLKEPYAWATEEFDINGRLVWSSITQFRPKELSWIRDLPTKKHYITITPLYKNEEQAEKITGVKSYREATQRLTDAYNGL*
Ga0078117_10998412	F066489	N/A	MLIMGFNLGCATVATSVATQAGVQVVGEQYLISQNKPMIKCNVINVIKGNKVCRVSKTYLIRRV*
Ga0078117_10998416	F100665	GGAG	MAKPYIKVISIKDTKAGDCKLTLDMNQAGREIILQAGIQKALSDYTVANSKKLSFWQKLQICWSILK*