Scaffold Ga0078117_1071449

Overview

Basic Information

• Taxon OID: 3300005758
• Scaffold ID: Ga0078117_1071449
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4071
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040004	Metagenome / Metatranscriptome	162	N
F052563	Metagenome / Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_10714494	F040004	GGAG	MKESRWDIPKPNFQKDLEFGKQGEEQVKQFLQGIVNGSFEVKSDRYRNGKMVVEIAQNPRKHGWKPSGLMVTEAEWWVYVYTMNQAMVVVSTERLKRYIKMLPKSRIRLFAEGTNNPAKGYLLLPEEVSQLLYDSAYDDVKE*
Ga0078117_10714497	F052563	N/A	MPNSGPQDWIYDIIPAKQVEEIESKARSLQQNLDNGVNVVLSATNDSAIKLCRAYYDSTQGNMQAWLHIMGFLDALIGTIEEHLQEEGIDPYAK*