Scaffold Ga0078117_1037980

Overview

Basic Information

• Taxon OID: 3300005758
• Scaffold ID: Ga0078117_1037980
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10828
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003127	Metagenome / Metatranscriptome	506	Y
F004474	Metagenome / Metatranscriptome	436	Y
F036698	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_103798015	F036698	GAG	MENFKQYRVWLEDSVEPEGGFWWHCYLDNKGCLQDFNHPDDEPDTLEWYIDHGYKVEEI*
Ga0078117_10379802	F003127	GAG	MTTGYNDRTCTNGKGGIKSVILFPLGNVSASTITANEVTSLTVTGEVFQYKLKSNLSSYTAPIQVNKDNGTLWYNQTLTMILASDTKELRSEIHLLAQNEVVCIVEKASGEYVALGFGEGLQIADGSAYGSGVLKSDRNGHDLVLTGMENDEVPDVNASVVATLLTQQSPSI*
Ga0078117_10379806	F004474	N/A	MSTMNYLLSVENLKKLGLIHNNTDTKLLAVAIKRSQDMHVQPALGTPLYKALLTRVETSSWTQDYLDLMNDYVVPCLVAFVDYRCALLLNEKLTNKAVGRVQDENLQPNSDSEQAAFRDQLRKDAYFYKERLIGYLMDDQGVKYPEYIEGCEDLTCNENVKKDRSGYKPINWQI*