Basic Information | |
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Taxon OID | 3300005758 Open in IMG/M |
Scaffold ID | Ga0078117_1014125 Open in IMG/M |
Source Dataset Name | Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Singapore Centre on Environmental Life Sciences Engineering (SCELSE) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1655 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project |
Source Dataset Sampling Location | ||||||||
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Location Name | Singapore | |||||||
Coordinates | Lat. (o) | 1.411221 | Long. (o) | 103.905587 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005092 | Metagenome / Metatranscriptome | 412 | Y |
F049499 | Metagenome | 146 | Y |
F058095 | Metagenome / Metatranscriptome | 135 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0078117_10141253 | F049499 | GGTGG | MTDTIIHMDYRLVDTLNADQLETNDLIGLGDEVVKIIEISPLRFGYALTYENEFGEKDIVDIGDDEIFELYILE* |
Ga0078117_10141254 | F058095 | GAGG | MEYNYVLTTSYDGELVSTHRISDFMEAHEAWAKCVDYGNAKEYATYNLTDPTGKMYTKNFYVNGGVSVK* |
Ga0078117_10141256 | F005092 | AGGA | MDKLEYALRTIANCDLCYGKGYHGFANGEDYDIEDCECNPYGLILDEDGDVIWDNGLLSESELSIFATGEAK* |
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