NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078117_1004508

Scaffold Ga0078117_1004508


Overview

Basic Information
Taxon OID3300005758 Open in IMG/M
Scaffold IDGa0078117_1004508 Open in IMG/M
Source Dataset NameCyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2784
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.411221Long. (o)103.905587Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F018349Metagenome / Metatranscriptome235Y
F031384Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0078117_10045081F031384AGGAMPNWVYNGLTIEGNPALVNDLVKQMNKPFVMLHDSWNPTSGNMEVSQTTYPNPVFAFYNI
Ga0078117_10045083F000450AGGAMGDRANFVFVQDSGETIVLYGHWAGHNMLTNLAEAVVAARHRWNDDSYATRIAISHMIGNSWSDETGWGLQVNSISDNEHKIPVINWKDSTFSLHNEDSHYNKDNKVRGMSNDAIFTMDLSAFCEKYTDSLLPV*
Ga0078117_10045085F018349AGGAGMDYRDGFEDGVKFTREVIIANIRQWAADAILGEEGQIMDDIADKIEFGTLDNDL*

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