NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078117_1003312

Scaffold Ga0078117_1003312


Overview

Basic Information
Taxon OID3300005758 Open in IMG/M
Scaffold IDGa0078117_1003312 Open in IMG/M
Source Dataset NameCyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1423
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.411221Long. (o)103.905587Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000962Metagenome / Metatranscriptome820Y
F014847Metagenome / Metatranscriptome259Y
F016528Metagenome / Metatranscriptome246N
F028095Metagenome192Y
F043356Metagenome / Metatranscriptome156N

Sequences

Protein IDFamilyRBSSequence
Ga0078117_10033121F043356N/AMKIDISSIDRTQFMVHEHSLNGEIVHLIQPQHIGTQWRQDNKHLRSVVVNYEGEVISA
Ga0078117_10033122F028095N/AMTEQIYMKLNDKVKRPTLSKEKINRENKHFKRVVDQYERWCKDGGGYETRETYEDDIIKCLFESDHDGYQLAEFLKKEVYIEPDSELVDILDGVSTVMYSLTKEILGQWTKENFLEIPSDVIGKKVNAKQGYRKYENHYITGIKPETYEVTIAEDTNNNKKGGWVIRYEDITFLD*
Ga0078117_10033123F000962N/AMNIHVPEEVKNKYPHMEFRGKQRIINDRTVIEAYNHATDQNFYYSFDEDFFWFAGQIPDYKLPKVS*
Ga0078117_10033124F014847GAGMERLNNMEFESDEEILVNTMDCIRDLHEENARLMQEVEQLKEENKEFNRKLKSIQALFL*
Ga0078117_10033125F016528N/AMINNNELFAKVLADNPLPYHFGDKVNTNRGIGFISGYNFKDREKTWKFTIRPFGLSNYYTDVETVYGKVE*

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