Basic Information | |
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Taxon OID | 3300005758 Open in IMG/M |
Scaffold ID | Ga0078117_1003312 Open in IMG/M |
Source Dataset Name | Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Singapore Centre on Environmental Life Sciences Engineering (SCELSE) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1423 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project |
Source Dataset Sampling Location | ||||||||
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Location Name | Singapore | |||||||
Coordinates | Lat. (o) | 1.411221 | Long. (o) | 103.905587 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F000962 | Metagenome / Metatranscriptome | 820 | Y |
F014847 | Metagenome / Metatranscriptome | 259 | Y |
F016528 | Metagenome / Metatranscriptome | 246 | N |
F028095 | Metagenome | 192 | Y |
F043356 | Metagenome / Metatranscriptome | 156 | N |
Protein ID | Family | RBS | Sequence |
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Ga0078117_10033121 | F043356 | N/A | MKIDISSIDRTQFMVHEHSLNGEIVHLIQPQHIGTQWRQDNKHLRSVVVNYEGEVISA |
Ga0078117_10033122 | F028095 | N/A | MTEQIYMKLNDKVKRPTLSKEKINRENKHFKRVVDQYERWCKDGGGYETRETYEDDIIKCLFESDHDGYQLAEFLKKEVYIEPDSELVDILDGVSTVMYSLTKEILGQWTKENFLEIPSDVIGKKVNAKQGYRKYENHYITGIKPETYEVTIAEDTNNNKKGGWVIRYEDITFLD* |
Ga0078117_10033123 | F000962 | N/A | MNIHVPEEVKNKYPHMEFRGKQRIINDRTVIEAYNHATDQNFYYSFDEDFFWFAGQIPDYKLPKVS* |
Ga0078117_10033124 | F014847 | GAG | MERLNNMEFESDEEILVNTMDCIRDLHEENARLMQEVEQLKEENKEFNRKLKSIQALFL* |
Ga0078117_10033125 | F016528 | N/A | MINNNELFAKVLADNPLPYHFGDKVNTNRGIGFISGYNFKDREKTWKFTIRPFGLSNYYTDVETVYGKVE* |
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