Scaffold Ga0078117

Basic Information
Taxon OID	3300005758 Open in IMG/M
Scaffold ID	Ga0078117_1001917 Open in IMG/M
Source Dataset Name	Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005758 Open in IMG/M

Scaffold ID

Ga0078117_1001917 Open in IMG/M

Source Dataset Name

Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Singapore Centre on Environmental Life Sciences Engineering (SCELSE)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14347
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (66.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14347

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (66.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.411221	Long. (^o)	103.905587	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Singapore

Coordinates

Lat. (^o)

1.411221

Long. (^o)

103.905587

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F002060	Metagenome / Metatranscriptome	597	Y
F085211	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_100191710	F000473	AGGA	MQSSNIYDNKHFKHGINLWTGEPNKPVFYNEEMKKKLREMKKPMLLIMDVVKYPDFLALRLYEDNFIQFTGSKKEEVIDYVTRAKKMIESYGVRCELEGVPGGRSIT*
Ga0078117_100191712	F000671	GGA	MEKILCYSCNKTKANLTLVKSGLLGINLFLCESCKENKMEPRWAVLIAGRQNGPEYVKDFIAKKKYSGNEISAAELLI*
Ga0078117_100191713	F002060	N/A	MQIDLITATLSLLAAVLGGMGTAIIAGLKENKKEKIRQTEREQDHLKMEIKDLRISLYQLEKELTEWKDKYYRAIQELIEIKSELEQALIQLDHVNIHTEEPPTI*
Ga0078117_100191727	F001280	N/A	MVGSETGIANIPGGMLDVSRDGESGLTLNMTANRQQRESFINE*
Ga0078117_100191729	F001176	GGA	MTENGTGMDAPPNNEASGAVTSREATRKNPSQGKFKSGVNKKGVMRIDVNKHGIRRETNMQPNVKRTGRKKV*
Ga0078117_100191735	F085211	GGA	VRNFLDNSIVEHNSKPPLRWIANLAGGIASKNMLELSYMEDEGLDKGFRYKYYGWLWDTFWPLYQKYGTFYKLDLDMDGPGWDDYDADGVPYWGNWDYEDTETGDAFRVINFGGKE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0078117_1001917

Overview

Ecosystem & Geography

Associated Families

Sequences