Basic Information | |
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Taxon OID | 3300005758 Open in IMG/M |
Scaffold ID | Ga0078117_1001337 Open in IMG/M |
Source Dataset Name | Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Singapore Centre on Environmental Life Sciences Engineering (SCELSE) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 107737 |
Total Scaffold Genes | 216 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 47 (21.76%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project |
Source Dataset Sampling Location | ||||||||
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Location Name | Singapore | |||||||
Coordinates | Lat. (o) | 1.411221 | Long. (o) | 103.905587 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005293 | Metagenome / Metatranscriptome | 405 | Y |
F010397 | Metagenome / Metatranscriptome | 304 | Y |
F011298 | Metagenome / Metatranscriptome | 292 | Y |
F022636 | Metagenome / Metatranscriptome | 213 | N |
F071998 | Metagenome / Metatranscriptome | 121 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0078117_1001337112 | F071998 | N/A | MNNELIAKALKKFPKAKKIAVENFTMGYNELSMEASMNLEMDASLYKWNAHTTNAIRYVLQHKHAFKTMAD* |
Ga0078117_1001337113 | F005293 | GAG | MNDTVTPFVPTRFVPTRDDLIGYISDIYKEINGFRPRPDWSMLTYEELDKWGRELSAEAILHRKQQVQWARLARKLRRARQRAWVQKKRTYFTPVTFTLGMLMPT* |
Ga0078117_1001337165 | F011298 | AGGAG | MAHFIKLNVLDPSHDVNSNKREYIPQLINLDMVVSVEPSKVHSLVFVKNNQQPIRVKESLDEILSLSKNCNEKTKING* |
Ga0078117_100133719 | F010397 | AGGA | MNVNEFERTKPVVTMKKINDLLRRIEEERVKTEILYRDRVRSLDEIKVTIQDLKSSFIKGE* |
Ga0078117_10013379 | F022636 | N/A | MSKYRKATLEELSAIGYVPNKTKYEKHIAFAQKYYPSNAATMVISIHSEYNDNTYDNSTRYVIVLDKDGNELPPLKATAKKCRDEWYSLPIPGTRSGGYSTFETDEHMDDVVIPLNATIPEFYVKED* |
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