Scaffold Ga0076924_1153358

Overview

Basic Information

• Taxon OID: 3300005747
• Scaffold ID: Ga0076924_1153358
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - control T14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2613
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027354	Metagenome / Metatranscriptome	195	Y
F045653	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076924_11533582	F045653	GAGG	MGLLAYLGWVKKLWTMVVDIVKLIEQTIPDDGAGKEKLAAFDLLLKAAIEKADDIDEEFEKLQPVAHDIVRAVVTLFNATGLFKKK*
Ga0076924_11533586	F027354	GAG	MATPKLNDKSEITLSIVWLVQIVSIVSLATWGYANISERIDVNAQETRSLRGNQNNYIFPDIRKIENEVIELQKEVLILQTDLKYYKEGQQ*