Scaffold Ga0076924_1042753

Overview

Basic Information

• Taxon OID: 3300005747
• Scaffold ID: Ga0076924_1042753
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - control T14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1285
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004343	Metagenome / Metatranscriptome	442	Y
F057353	Metagenome	136	N
F077948	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076924_10427531	F004343	GAGG	MTQHREMIEEAKRLLNSERENIPSMSKNFSKDYWLLTYPCGKIVKTYEDKRKNDVVIQESYND*
Ga0076924_10427533	F057353	GAG	MSVTRYNFRKPKINRQQHEAINKILTHPHFNALINPQALDVLTDLGISAKQFQDIINKNKSILTSYKTKEIK*
Ga0076924_10427536	F077948	N/A	KLHKPQQPKPWTDVAREMTENIIFVIATVLALVIIIKGVM*