Basic Information | |
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Taxon OID | 3300005739 Open in IMG/M |
Scaffold ID | Ga0076948_1094985 Open in IMG/M |
Source Dataset Name | Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Singapore Centre on Environmental Life Sciences Engineering (SCELSE) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4831 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (87.50%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project |
Source Dataset Sampling Location | ||||||||
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Location Name | Singapore | |||||||
Coordinates | Lat. (o) | 1.411221 | Long. (o) | 103.905587 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F005092 | Metagenome / Metatranscriptome | 412 | Y |
F014496 | Metagenome / Metatranscriptome | 262 | Y |
F040535 | Metagenome / Metatranscriptome | 161 | Y |
F049499 | Metagenome | 146 | Y |
F058095 | Metagenome / Metatranscriptome | 135 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0076948_109498512 | F014496 | AGG | MKSYSIPDLLVGQTYYPRSLARKYQYGEINFAEKRDDIYLSDGYEAYAIRFNGYRWATVAVKVGE* |
Ga0076948_109498516 | F040535 | AGG | MLTLSYTVEKEGNLITVSDRLMLNEYQINNLMDTLVA |
Ga0076948_10949853 | F049499 | AGG | MLTMDYRLVDILNADQLEINDLIGLGDEVVKINSIAPIKDGFSLEIENEFGEKDIIEIGDDEQFELFIFS* |
Ga0076948_10949854 | F058095 | GAGG | MEYNYVLTTAYDGELFSTHRISDFMEAHEAWAKCVDHGNAKEYATYNLTDLTGKMYTKTFYANGAVVIK* |
Ga0076948_10949856 | F005092 | AGGA | MDKLEYALNTIRNCDFCFGKGTLYWSVGEDYDFQDCECNPYGLILDESGDVIWDNGLLSEPELAIFGSKEAN* |
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