Scaffold Ga0076948_1094985

Overview

Basic Information

• Taxon OID: 3300005739
• Scaffold ID: Ga0076948_1094985
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4831
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005092	Metagenome / Metatranscriptome	412	Y
F014496	Metagenome / Metatranscriptome	262	Y
F040535	Metagenome / Metatranscriptome	161	Y
F049499	Metagenome	146	Y
F058095	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076948_109498512	F014496	AGG	MKSYSIPDLLVGQTYYPRSLARKYQYGEINFAEKRDDIYLSDGYEAYAIRFNGYRWATVAVKVGE*
Ga0076948_109498516	F040535	AGG	MLTLSYTVEKEGNLITVSDRLMLNEYQINNLMDTLVA
Ga0076948_10949853	F049499	AGG	MLTMDYRLVDILNADQLEINDLIGLGDEVVKINSIAPIKDGFSLEIENEFGEKDIIEIGDDEQFELFIFS*
Ga0076948_10949854	F058095	GAGG	MEYNYVLTTAYDGELFSTHRISDFMEAHEAWAKCVDHGNAKEYATYNLTDLTGKMYTKTFYANGAVVIK*
Ga0076948_10949856	F005092	AGGA	MDKLEYALNTIRNCDFCFGKGTLYWSVGEDYDFQDCECNPYGLILDESGDVIWDNGLLSEPELAIFGSKEAN*