Scaffold Ga0076948

Basic Information
Taxon OID	3300005739 Open in IMG/M
Scaffold ID	Ga0076948_1038273 Open in IMG/M
Source Dataset Name	Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005739 Open in IMG/M

Scaffold ID

Ga0076948_1038273 Open in IMG/M

Source Dataset Name

Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Singapore Centre on Environmental Life Sciences Engineering (SCELSE)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15356
Total Scaffold Genes	57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (71.93%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

15356

Total Scaffold Genes

57 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (71.93%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.411221	Long. (^o)	103.905587	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Singapore

Coordinates

Lat. (^o)

1.411221

Long. (^o)

103.905587

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001881	Metagenome / Metatranscriptome	622	Y
F004208	Metagenome / Metatranscriptome	448	Y
F020144	Metagenome / Metatranscriptome	225	Y
F020347	Metagenome / Metatranscriptome	224	Y
F027061	Metagenome / Metatranscriptome	196	N
F035276	Metagenome / Metatranscriptome	172	Y
F044304	Metagenome / Metatranscriptome	154	Y
F047649	Metagenome / Metatranscriptome	149	N
F054801	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076948_103827314	F047649	GGA	MRYYDRTYEHQCDFDAKNRAEKASQDYYKKWINLRKEVRELVRTQNISITPEFAKLIGLK
Ga0076948_103827329	F035276	GGAGG	MSSYISCYNMNRELEHFEVPEPVYVYIVQLENQIKYGSGGVKRLYPFRFGEKVND*
Ga0076948_103827331	F004208	AGG	MTYQLNPEAKAFSYTREELFDCITKIVAHPHKTITEHDQSRALAIMVVFEDYFSNFLESDNNGSHYVYERDELDFEDFVRHKLNLEYYHRVDADEVLK*
Ga0076948_103827333	F054801	N/A	MTYKVRYTGFGPYKDKFEPNQILTVKEMLPYAWHENFTFEEVEGEYHTIFFEDVK*
Ga0076948_103827340	F044304	N/A	MTILNLTDRQVTIISIAITNLYDEIAKSGEGSLMRDDIMELSKYIQQQYQEAQQ*
Ga0076948_103827346	F020144	AGGA	MGIFYTKLPNCDVVRSKIDVFELYDEPEEKTYRVELTVDNEGVFITSVSGGAREDMSIGHKDVAIAVARAILEAYGEV*
Ga0076948_103827348	F001881	N/A	LTIPVRGLIVYKYPVLSMSERTQEFMNAVWEARNAGADTEEKLVAAILKTAAETVRFYQAQNDLIVLDKQDMLQLAQELEE*
Ga0076948_10382735	F020347	GAGG	MSSKTYLQYVAIPALAFFFSAIISYNLTPEKTPQHNSTVSGSSGNLKCTSSCVVKEQ*
Ga0076948_10382738	F027061	GAG	MTTRALQILESTMELSMRPKSGDRQKLIARVIREVADRLCTDWGELEDPVSVLREIADEVEAL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0076948_1038273

Overview

Ecosystem & Geography

Associated Families

Sequences