NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0076948_1038273

Scaffold Ga0076948_1038273


Overview

Basic Information
Taxon OID3300005739 Open in IMG/M
Scaffold IDGa0076948_1038273 Open in IMG/M
Source Dataset NameCyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15356
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (71.93%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Associated Families9

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.411221Long. (o)103.905587Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001881Metagenome / Metatranscriptome622Y
F004208Metagenome / Metatranscriptome448Y
F020144Metagenome / Metatranscriptome225Y
F020347Metagenome / Metatranscriptome224Y
F027061Metagenome / Metatranscriptome196N
F035276Metagenome / Metatranscriptome172Y
F044304Metagenome / Metatranscriptome154Y
F047649Metagenome / Metatranscriptome149N
F054801Metagenome139N

Sequences

Protein IDFamilyRBSSequence
Ga0076948_103827314F047649GGAMRYYDRTYEHQCDFDAKNRAEKASQDYYKKWINLRKEVRELVRTQNISITPEFAKLIGLK
Ga0076948_103827329F035276GGAGGMSSYISCYNMNRELEHFEVPEPVYVYIVQLENQIKYGSGGVKRLYPFRFGEKVND*
Ga0076948_103827331F004208AGGMTYQLNPEAKAFSYTREELFDCITKIVAHPHKTITEHDQSRALAIMVVFEDYFSNFLESDNNGSHYVYERDELDFEDFVRHKLNLEYYHRVDADEVLK*
Ga0076948_103827333F054801N/AMTYKVRYTGFGPYKDKFEPNQILTVKEMLPYAWHENFTFEEVEGEYHTIFFEDVK*
Ga0076948_103827340F044304N/AMTILNLTDRQVTIISIAITNLYDEIAKSGEGSLMRDDIMELSKYIQQQYQEAQQ*
Ga0076948_103827346F020144AGGAMGIFYTKLPNCDVVRSKIDVFELYDEPEEKTYRVELTVDNEGVFITSVSGGAREDMSIGHKDVAIAVARAILEAYGEV*
Ga0076948_103827348F001881N/ALTIPVRGLIVYKYPVLSMSERTQEFMNAVWEARNAGADTEEKLVAAILKTAAETVRFYQAQNDLIVLDKQDMLQLAQELEE*
Ga0076948_10382735F020347GAGGMSSKTYLQYVAIPALAFFFSAIISYNLTPEKTPQHNSTVSGSSGNLKCTSSCVVKEQ*
Ga0076948_10382738F027061GAGMTTRALQILESTMELSMRPKSGDRQKLIARVIREVADRLCTDWGELEDPVSVLREIADEVEAL*

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