Basic Information | |
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Taxon OID | 3300005739 Open in IMG/M |
Scaffold ID | Ga0076948_1038273 Open in IMG/M |
Source Dataset Name | Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Singapore Centre on Environmental Life Sciences Engineering (SCELSE) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15356 |
Total Scaffold Genes | 57 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (71.93%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
Associated Families | 9 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project |
Source Dataset Sampling Location | ||||||||
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Location Name | Singapore | |||||||
Coordinates | Lat. (o) | 1.411221 | Long. (o) | 103.905587 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001881 | Metagenome / Metatranscriptome | 622 | Y |
F004208 | Metagenome / Metatranscriptome | 448 | Y |
F020144 | Metagenome / Metatranscriptome | 225 | Y |
F020347 | Metagenome / Metatranscriptome | 224 | Y |
F027061 | Metagenome / Metatranscriptome | 196 | N |
F035276 | Metagenome / Metatranscriptome | 172 | Y |
F044304 | Metagenome / Metatranscriptome | 154 | Y |
F047649 | Metagenome / Metatranscriptome | 149 | N |
F054801 | Metagenome | 139 | N |
Protein ID | Family | RBS | Sequence |
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Ga0076948_103827314 | F047649 | GGA | MRYYDRTYEHQCDFDAKNRAEKASQDYYKKWINLRKEVRELVRTQNISITPEFAKLIGLK |
Ga0076948_103827329 | F035276 | GGAGG | MSSYISCYNMNRELEHFEVPEPVYVYIVQLENQIKYGSGGVKRLYPFRFGEKVND* |
Ga0076948_103827331 | F004208 | AGG | MTYQLNPEAKAFSYTREELFDCITKIVAHPHKTITEHDQSRALAIMVVFEDYFSNFLESDNNGSHYVYERDELDFEDFVRHKLNLEYYHRVDADEVLK* |
Ga0076948_103827333 | F054801 | N/A | MTYKVRYTGFGPYKDKFEPNQILTVKEMLPYAWHENFTFEEVEGEYHTIFFEDVK* |
Ga0076948_103827340 | F044304 | N/A | MTILNLTDRQVTIISIAITNLYDEIAKSGEGSLMRDDIMELSKYIQQQYQEAQQ* |
Ga0076948_103827346 | F020144 | AGGA | MGIFYTKLPNCDVVRSKIDVFELYDEPEEKTYRVELTVDNEGVFITSVSGGAREDMSIGHKDVAIAVARAILEAYGEV* |
Ga0076948_103827348 | F001881 | N/A | LTIPVRGLIVYKYPVLSMSERTQEFMNAVWEARNAGADTEEKLVAAILKTAAETVRFYQAQNDLIVLDKQDMLQLAQELEE* |
Ga0076948_10382735 | F020347 | GAGG | MSSKTYLQYVAIPALAFFFSAIISYNLTPEKTPQHNSTVSGSSGNLKCTSSCVVKEQ* |
Ga0076948_10382738 | F027061 | GAG | MTTRALQILESTMELSMRPKSGDRQKLIARVIREVADRLCTDWGELEDPVSVLREIADEVEAL* |
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